Supporting data for "Conventional and hyperspectral time-series imaging of maize lines widely used in field trials"
Dataset type: Phenotyping, Imaging, Software
Data released on November 07, 2017
Liang Z; Pandey P; Stoerger V; Xu Y; Qiu Y; Ge Y; Schnable JC (2017): Supporting data for "Conventional and hyperspectral time-series imaging of maize lines widely used in field trials" GigaScience Database. http://dx.doi.org/10.5524/100371
Maize (Zea mays ssp. mays) is one of three crops, along with rice and wheat, responsible for more than 1/2 of all calories consumed around the world. Increasing the yield and stress tolerance of these crops is essential to meet the growing need for food. The cost and speed of plant phenotyping is currently the largest constraint on plant breeding efforts. Datasets linking new types of high throughput phenotyping data collected from plants to the performance of the same genotypes under agronomic conditions across a wide range of environments are essential for developing new statistical approaches and computer vision based tools.
A set of maize inbreds - primarily recently off patent lines -- were phenotyped using a high throughput platform at University of Nebraska-Lincoln. These lines have been previously subjected to high density genotyping, and scored for a core set of 13 phenotypes in field trials across 13 North American states in two years by the Genomes to Fields consortium. A total of 485 GB of image data including RGB, hyperspectral, fluorescence and thermal infrared photos has been released.
Additional details
Read the peer-reviewed publication(s):
(PubMed: 29186425)
Additional information:
Sample ID | Taxonomic ID | Common Name | Genbank Name | Scientific Name | Sample Attributes |
---|---|---|---|---|---|
Plant_001-9 | 381124 | mays | Zea mays sub sp. Mays | Description:Series of phenotyping images taken of ... Experiment type:imaging Alternative names:C103 ... + | |
Plant_002-7 | 381124 | mays | Zea mays sub sp. Mays | Description:Series of phenotyping images taken of ... Experiment type:imaging Alternative names:B37 ... + | |
Plant_003-3 | 381124 | mays | Zea mays sub sp. Mays | Description:Series of phenotyping images taken of ... Experiment type:imaging Alternative names:A619 ... + | |
Plant_004-10 | 381124 | mays | Zea mays sub sp. Mays | Description:Series of phenotyping images taken of ... Experiment type:imaging Alternative names:CM105 ... + | |
Plant_005-23 | 381124 | mays | Zea mays sub sp. Mays | Description:Series of phenotyping images taken of ... Experiment type:imaging Alternative names:PHG39 ... + | |
Plant_006-25 | 381124 | mays | Zea mays sub sp. Mays | Description:Series of phenotyping images taken of ... Experiment type:imaging Alternative names:PHG83 ... + | |
Plant_007-26 | 381124 | mays | Zea mays sub sp. Mays | Description:Series of phenotyping images taken of ... Experiment type:imaging Alternative names:PHJ40 ... + | |
Plant_008-19 | 381124 | mays | Zea mays sub sp. Mays | Description:Series of phenotyping images taken of ... Experiment type:imaging Alternative names:DKPB80 ... + | |
Plant_009-13 | 381124 | mays | Zea mays sub sp. Mays | Description:Series of phenotyping images taken of ... Experiment type:imaging Alternative names:LH162 ... + | |
Plant_010-5 | 381124 | mays | Zea mays sub sp. Mays | Description:Series of phenotyping images taken of ... Experiment type:imaging Alternative names:A634 ... + |